kilomentor

Selective Silyl Group Protection: A Possible Preparation for Scalable Extractive Separations using Acetonitrile and Hexane Phases

kilomentor | 27 November, 2012 18:21



Kilomentor has written about the selective reactivity of one among several of the same functional groups within a chemical structure at

http://kilomentor.chemicalblogs.com/55_kilomentor/archive/1100_nitriles_separated_by_competitive_reaction_and_then_simple_extraction.html

Protecting groups are often used to differentiate such similar groups. Kilomentor has also already written about catalyzing trimethylsilylation of a wide variety of functional groups at
http://kilomentor.chemicalblogs.com/55_kilomentor/archive/200_improved_extractive_separations_with_organicorganic_biphasic_solvent_systems_catalyzed_total_silylation_to_improve_partition_coefficients.html  and the use that can be made of this transformation towards increased hydrophobicity to improve the solubility of the protected substrates in hydrocarbon solvents. This means trimethylsilylated substrates can be better extracted from acetonitrile, for example, into, for example, heptane.

I have seen very little about selective trimethylsilylation even though introducing this group ranks among the easiest and cheapest. As an older chemist, the references that I do are also old. In a paper concerning prostaglandin synthesis [G. L. Bundy and D. C. Peterson, Tet. Lett.(1978) 41-44 ] 
http://cas.illinoisstate.edu/sites/tmitche/files/2012/02/Bundy-G.-TL-1978-1-41.pdf  the authors were trying to selectively trimethylsilylate one of two secondary alcohols  in the five membered ring of their prostaglandin intermediates.

They reported “attempted selective silylation…. using t-butyldimethylsilyl chloride under standard conditions prove surprisingly unsuccessful. Even at -60 (7 days), a statistical array of products was obtained including starting material, both mono silyl derivatives and the disilyl derivative. Selective silylation ….could be achieved with trimethylsilyldiethylamine, a sterically more discriminating silylating agent, yielding a monosilyl derivative…(70% after rapid chromatography).”

I would not be obvious to me that trimethylsilyldiethylamine should be more discriminating than t-butyldimethylsilyl chloride so what hypothetical explanation could there for this difference?  According to Neumann’s Rule of Six for identifying steric hindrance to a nucleophilic attack, the amine derivative would have a score of 6, while the silyl chloride compound would have the surprising score of 0. Counting the attacking oxygen as 1, the attacked Si as 2, and the subsequent carbon chain and then counting the number of hydrogens at position 6, you can see that in fact t-butyldimethylsilyl chloride has no hydrogens 6 atoms away. It has 15 hydrogens five atoms away and most people (including myself) would consider that atoms of this type do impose a steric barrier as in pivalate esters, for example. Perhaps something else explains the selectivity.

Another of my old pertinent papers describes a selective trimethylsilylation with trimethylsilyldiethylamine [Paul Baret, Eliezer Barriero. Andrew E. Greene, Jean-Louis Luche, Marco-Antonio Teixeira and Pierre Crabbe, Tet. Lett. (1979) 29312938.]also in the prostaglandin series.

In any case, it makes me think that N-t-butyl-N-trimethylsilylamine [CAS 5577-67-31] might be a relatively inexpensive and even more selective silylating agent than trimethylsilyldiethylamine because it has a score of 9 according to Neumann’s Rule of Six! Furthermore, what is pragmatic is that it could be easily prepared in situ from one equivalent of hexamethyldisilazane and two equivalents of t-butylamine. Alternatively, for a quick test,  it can be bought from Sigma-Aldrich. The co-product t-butylamine b.p. 46 C can be distilled to drive the silylation to the required degree of completion.

Friedel Craft Work Up of Aluminum Chloride catalyzed Reaction At Scale

kilomentor | 13 November, 2012 17:53

Larry Fertel asks a question about his Friedel Craft reaction at the

Organic Process Research & Development Networking Group on LinkedIn.

Larry wrote, “I am running a classical F-C reaction based on a process given to us from our customer: benzene derivative, benzoyl chloride (1.1 eq.), AlCl3 (1.1 eq), nitrobenzene solvent, 85 deg C, . i.e standard conditions. When I cool and quench into water and HCl or add water/HCl to the reaction, I am supposed to see 2 layers, then separate the aqueous and go forward with the isolation of the product in the organic layer, etc..

Instead, after the exotherm of quenching, I get massive amounts of solids, the stirrer jams, etc... a real mess. The solids are presumably Al salts, I don't see the nitrobenzene sitting in the flask, it seems to be incorporated into the solids. Note that the reaction goes to completion, no s.m. is seen at all. Is there a "standard" recipe for the workup for this reaction to avoid formation of solids. Note that the customer received the process from their previous manufacturer who is loath to give more details. Also, no time or money to investigate other methods, catalysts, etc..”

From Larry’s description of the reaction methodology I assume the following:

1. The reaction mixture is homogeneous at the end of the heating period. {I assume this because aluminum chloride forms a soluble complex with nitrobenzene. This is the reason for its popularity in F-C reactions. Otherwise it is not a particularly practical solvent since it is high boiling and is usually removed in the end by steam distillation.}

2. When you cool the reaction mixture before quenching it is not a mess yet.

3. You are adding the aqueous HCl into the nitrobenzene solution or slurry. {I assume this because otherwise you would probably have described what happens when a small amount of the quench solution is added, and a little more and so on, with the mixture getting thicker and thicker.}

Larry does not mention details of how he was instructed to do this quench or to what temperature the reaction contents were initially cooled. I think it is very important to keep the reaction mixture very cold during the quench. In fact it is for this reason that a mixture of water/ice and HCl is so often used. Reaction mixtures often thicken so much that wall cooling is probably most often going to be inadequate. If the quenching mixture overheats some hydrolysis of the aluminum chloride to an aluminum hydroxide gel is likely to occur. This I am guessing is giving the mess you report.

Put another way that is to say, it is very important that the solution of aluminum chloride hexahydrate that forms not get warm because the chlorine atoms can be replaced by hydroxyls to give trihydroxyaluminum, which is a gel.

Wikipedia teaching seems to confirm this analysis when it states: “Aluminum chloride is hygroscopic, having a very pronounced affinity for water. It fumes in moist air and hisses when mixed with liquid water as the Cl- ions are displaced with H2O molecules in the lattice to form the hexahydrate AlCl3·6H2O (also white to yellowish in color). The anhydrous phase cannot be regained on heating as HCl is lost leaving aluminum hydroxide or alumina (aluminum oxide) (my italics):

Al(H2O)6Cl3 → Al(OH)3 + 3 HCl + 3 H2O”

Looking for a standard Friedel-Craft acylation reaction with nitrobenzene as solvent, I found the synthesis of methyl naphthyl ketone in Organic Vogel [ATextbook of Practical Organic Chemistry , Vogel, Third Edition, Longmans, pg. 731].
In their procedure HCl is driven off by reducing the internal pressure rather than heating to 85 C as Larry does. The quench is with “an excess of crushed ice”. This suggests to me that so long as the temperature is controlled no additional hydrogen chloride is required although it doesn’t hurt but and reaction mixture must be mixed together with a consistent excess of ice. This is not do-able at scale because adding solid ice cannot be done quickly enough if at all. The quench of the mixture into an excess of ice and enough water to make it stirrable seems a better bet.

I am assume that Larry’s product is soluble in nitrobenzene since the procedure you have been given separates the phases and isolates the product from the nitrobenzene. Probably increasing the amount of nitrobenzene a bit until a solution is worked out will make the experimentation easier. Then when one has something more workable reduce the nitrobenzene back.

Removal of Hydroxyl Impurities from a Solid Product at Scale

kilomentor | 12 November, 2012 15:04

 

Kilomentor has several times proposed the purification of a substance by selective reaction of its impurities to produce new impurities that can be separated by simple aqueous base extraction. One of the proposed methods for removing an alcohol impurity from a predominantly non-alcohol product is reaction with succinic anhydride or phthalic anhydride and then water extraction of the carboxylic acid product impurity with dilute aqueous base. http://kilomentor.chemicalblogs.com/55_kilomentor/archive/149_alcohols_organic_chemistry_isolations_with_reversible_derivatives_particularly_phthalate_esters.html
This is precisely the method patented for the purification of some samples of the drug substances citalopram and escitalopram in CA558198 ( WO2005/084643).

In these particular patented instances the reason for needing to get these hydroxyl impurities reduced was that the size and the crystal polymorph being formed was dependent on their concentrations. The hydroxyl-containing impurity in citalopram or escitalopram was Z-4-(4-dimethylamino-1-(4-fluorophenyl)-but-1-enyl)-3-hydroxymethyl- benzonitrile. Reduction of this purity by a factor of 10 was easily achieved heating with succinic anhydride or phthalic anhydride and then extracting.


Example 1

Scavenging of hydroxyl containing impurity by succinic anhydride

 A mixture of R- and S-Citalopram (55.5 g) containing 0.6% of Z-4-(4-dimethylamino1-( 4-fluorophenyl)-but-l-enyl)-3-hydroxymethyl-benzonitriIe is dissolved in dry toluene (145.0 g). Succinic anhydride (0.5 g) and aqueous ammonia (25% by weight) (3 ml) is added (pH = 10.5-11.0). The phases are separated and the toluene phase is washed with water (3x 120 ml). The toluene phase is evaporated and the yield is 53.0 g (95%). The product contains 0.06% of Z-4-(4-dimethylamino1-( 4-fluorophenyl)-but-1-enyl)-3-hydroxymethyl-benzonitrile.

But this is only indicated if first knows that your product constituting non-nucleophilic material, does have hydroxyl containing impurities. One potential means to test for free hydroxyls and indeed all nucleophilic species (NH and SH also) is to first, in a tiny analytical amount, derivatize any nucleophilic functional group containing compounds to give colored materials that can be seen in a developed thin layer chromatogram as distinct from the unreactive main component. A colored derivatizing agent such as p-phenylazobenzoyl chloride  or 4’-nitroazobenzene-4-carboxylic acid chloride ( Fieser & Fieser Reagents for Organic Synthesis Vol. 1), can be expected to produce colored spots on a TLC of the crude organic solution obtained by treating with such a reagent in an inert organic solvent and then washing with dilute aqueous base to remove excess reagent. 

If such colored spots are present a treatment with succinic anhydride or phthalic anhydride or other hydroxyl scavenging agent can to be useful for purification.

 

Separating Sulphur-containing from Sulphur-free Compounds both in the Lab and At Scale

kilomentor | 06 November, 2012 14:18

Mahendar Velpuri recently asked  in the Custom Organic Synthesis and Process Chemistry Forum on LinkedIn
http://www.linkedin.com/groupItem?view=&gid=1061737&type=member&item=181862674&qid=5a7a2e3c-b873-4179-b40f-be79d4205731&trk=group_most_popular-0-b-ttl&goback=%2Egmp_1061737

  how to remove dimethylsulfide from an organic oily compound when he had already tried column purification and solvent stripping.

There were what I think simpler suggestions than Kilomentor’s but the question reminded me that a blog could be written about the method of separating sulphur containing from non-sulphur containing compounds that I was invoking, since it could be applied to a range of situations and it seems never to have resurfaced in the literature since that first reference in the 60s.
In 1964, G.M.Badger, N. Kowanko and W.H. F. Sasse submitted a short communication  to J. Chromatog. 13, (1964) 234 titled, Chromatography on a column of Raney cobalt.
The small experimental read as follows:

“The freshly prepared Raney cobalt (ca 7.5 g) was mixed with clean sand and packed into a chromatofraphic column (1.2 cm X 10 cm.). A mixture of isoeugenol (0.5 g) and 2,5-dimethylthiophene (0.5 g) was applied to the column and eluted with methanol ( a 3-ft head of liquid was required). Evaporation of the first fraction 930 ml) gave sulfur-free isoeugenol (0.477 g). Subsequent fractions contained only trace amounts of isoeugenol and were also sulfur-free. The dimethylthiophene was subsequently recovered by Soxhlet extraction of the cobalt with methanol.” (my italics).

The discussion pointed out that active cobalt metal binds sulfur containing compounds by chemisorption. However, unlike Raney nickel cobalt has a much reduced tendency to desulfurize material. Nevertheless, this binding is powerful,much stronger than simple adsorption, as the rigorous conditions described for removing the dimethylthiophene from the solid phase attested.

What this suggested to me was that the method would not need to be conducted as a column chromatography. It would probably work simply by stirring the solid with a solution containing the sulfurous material, filtering through filter aid, and washing. Thus the method could separate sulfur- containing from sulfur-free materials by filtration as easily as an insoluble polymer is separated from a solution.

That  desulfurization under the conditions of a separation is unlikely is further suggested by another paper [1960] by the same authors which contains the sentence “Desulphurisation with Raney cobalt was similar to that with W7-J Raney nickel in that, although little reaction occurred in boiling methanol, it was complete in diethyl phthalate at 220.”

It would seem that, besides obviously being able to separate the sulfur containing from sulfur free compounds, the technology should be adaptable to separate compounds that have been derivatized with a sulfur containing reagent from compounds without such appendage.

It might be that the method of recovery of the chemisorbed compound could be improved. Eluting with a solvent containing carbon disulfide or COS might speed the recovery without ireversible contaminating the eluting solvent.

Also a chemisorbant simpler to prepare than Raney cobalt might be available by reducing a cobalt salt with sodium borohydride to give a cobalt boride analogous to the Nickel boride catalysts called P-1 and P-2 developed by H. C.Brown et al.


 

 
Powered by LT - Design by BalearWeb